Package: exmort
Title: All-Cause and Excess Mortality Calculator
Version: 0.1.1.9000
Authors@R: c(
    person("Shanlong", "Ding", email = "dings@who.int",
           role = c("aut", "cre")),
    person("World Health Organization Regional Office for the Western Pacific",
           role = c("cph", "fnd")))
Description: An interactive 'shiny' application that estimates
        all-cause mortality and excess mortality from country-level
        weekly or monthly death counts, including separate monthly
        analyses by cause of death. Users supply observed deaths and an
        event calendar (for example COVID-19 waves or typhoons); the
        app fits one or more statistical baseline models (historical
        average, negative binomial regression, quasi-Poisson
        regression, zero-inflated Poisson regression, ARIMA
        (autoregressive integrated moving average) and SARIMA (seasonal
        ARIMA) models, GAM (generalized additive model) splines, and
        the model of Karlinsky and Kobak (2021)
        <doi:10.7554/eLife.69336>) using periods outside the supplied
        events, estimates expected deaths across the observed series,
        and reports excess deaths, P-scores (excess deaths as a
        percentage of expected deaths) and confidence limits with
        tables, plots and downloadable reports. Launch the application
        with run_app().
License: GPL-3
Encoding: UTF-8
Language: en-GB
Imports: base64enc, data.table, dplyr, DT, flextable, forecast,
        ggplot2, ggrepel, htmltools, ISOweek, kableExtra, knitr,
        lubridate, mgcv, openxlsx, parallel, plotly, reactable, readxl,
        RColorBrewer, reshape2, rmarkdown, scales, shiny, shinyalert,
        shinycssloaders, shinyjs, stringr, tibble, tidyr, withr, zoo
Suggests: DSIR, officedown, testthat (>= 3.0.0), tinytex
Config/testthat/edition: 3
SystemRequirements: pandoc (>= 1.14) for report rendering; a LaTeX
        installation (for example TinyTeX) is required only for PDF
        reports.
VignetteBuilder: knitr
URL: https://github.com/shanlong-who/exmort,
        https://shanlong-who.github.io/exmort/
BugReports: https://github.com/shanlong-who/exmort/issues
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libfribidi-dev make libharfbuzz-dev texlive
        libicu-dev libjpeg-dev libpng-dev libtiff-dev libuv1-dev
        libwebp-dev libxml2-dev libssl-dev zlib1g-dev
Repository: https://shanlong-who.r-universe.dev
Date/Publication: 2026-10-21 02:46:58 UTC
RemoteUrl: https://github.com/shanlong-who/exmort
RemoteRef: HEAD
RemoteSha: 2774e32f883c9018db3036c6a0110b1cd50ddd79
NeedsCompilation: no
Packaged: 2026-10-21 06:25:32 UTC; root
Author: Shanlong Ding [aut, cre],
  World Health Organization Regional Office for the Western Pacific [cph,
    fnd]
Maintainer: Shanlong Ding <dings@who.int>